Publications

Pierre-Cyril Aubin-Frankowski, Jean-Philippe Vert (2020). Gene regulation inference from single-cell RNA-seq data with linear differential equations and velocity inference. Bioinformatics.

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Felix Raimundo, Celine Vallot, Jean-Philippe Vert (2020). Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis. Genome biology.

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Marie-Ming Aynaud, Olivier Mirabeau, Nadege Gruel, Sandrine Grossetête, Valentina Boeva, Simon Durand, Didier Surdez, Olivier Saulnier, Sakina Zaïdi, Svetlana Gribkova, Aziz Fouché, Ulykbek Kairov, Virginie Raynal, Franck Tirode, Thomas G. P. Grünewald, Mylene Bohec, Sylvain Baulande, Isabelle Janoueix-Lerosey, Jean-Philippe Vert, Emmanuel Barillot, Olivier Delattre, Andrei Zinovyev (2020). Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution. Cell Reports.

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Julien Chiquet, Mahendra Mariadassou, Stéphane Robin (2020). The Poisson-lognormal model as a versatile framework for the joint analysis of species abundances. bioRxiv.

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Elias Ventre, Thibault Espinasse, Charles-Edouard Bréhier, Vincent Calvez, Thomas Lepoutre, Olivier Gandrillon (2020). Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty. bioRxiv.

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Jie Liu, Yuanhao Huang, Ritambhara Singh, Jean-Philippe Vert, William Stafford Noble (2019). Jointly embedding multiple single-cell omics measurements. bioRxiv.

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